[转载]图形化处理软件P4VASP学习2

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转载 |
分类: vasp |
转载 http://blog.sciencenet.cn/blog-567091-736149.html
Calculation
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Use relaxed geometry.
-
Precalculate the charge density.
-
Inspect DOS with full k-points mesh.
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Inspect band structure with selected strips of k-points.
-
Consider the right method for
projecting wave functions if you want projected DOS and band structure .
Please consult
Example for this article can be found in
Loading and 3D View
Visulaization will be explained on a PbTiO3 system.
The
Start p4vasp and open the file
(select
After the file is opened, you should see PbTiO3 in
the
You can show the 3d structure by
pressing
http://www.p4vasp.at/images/doc/pbtio3-view.png
DOS and Band structure
Select
http://www.p4vasp.at/images/doc/dosbands-icon.png
This will open a
http://www.p4vasp.at/images/doc/pbtio3-dos.png
Waring about DOS:
In all DOS/bandstructure graphs is the energy relative to the Fermi
energy - i.e. the Fermi energy on the graph is zero.
You can change between different modes (DOS / bandstructure) in
graph menu
http://www.p4vasp.at/images/doc/dosbands-graph-show.png
-
show DOS
turns showing DOS on and off. This is mainly useful for projected DOS. -
DOS: Shows the density of states. (Energy on x-axis, DOS on y-axis.
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DOS (X-axis): Shows the density of states. (Axes are switched, i.e. DOS on x-axis, energy on y-axis).
-
Bands: Shows the band structure.
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DOS and Bands: Shows DOS and band structure side by side.
Local DOS and band structure
Calculation of
local projections of DOS and band structure depends on VASP
settings.
Selecting
http://www.p4vasp.at/images/doc/electroniccontrolapplet.png
This form controls display of both
In order to add a new projection do the following:
-
Selecting atoms(s). You can do this by either pointing to atoms in 3d view and pressing space or by a selection language - e.g. "Pb" will select all lead atoms. Contributions on all selected atoms will be summed together.
-
(optional) Write description label, that will appear in the graph legend. If not specified, it will be filled automatically.
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(optional) You can specify symbol color, type and size to be used for projected band structure.
-
Spin projection
(only relevant if spin has been calculated). -
Orbital projection: use checkboxes, select and deselect buttons
to select desired spherical harmonics projections (orbitals). Press Select all to sum up all orbital projections. Contributions on all selected spherical harmonics projections will be summed together. -
Press
Add new line.
Note, that
http://www.p4vasp.at/images/doc/dosbands-graph-pb.png
在DOS图左上角有个graph,点这个选择export|
导出你需要的格式。一般我不会直接用它生成的图,我都是导成data格式,然后再origin或其他专业画图软件中画图。
Selection language by example:
-
Ca
- shows all calcium atoms. caWarning: the case matters, thus or CAwill not work. -
2
- select the second atom in the structure. -
2-5
- select the atoms in the range from second to fifth (i.e. 2,3,4,5). -
2-
-select every atom from the second one (2,3,4,5,6,...). -
-5
-select every atom up to the fifth (1,2,3,4,5). -
all
- select all atoms. -
#1 - select all atoms of the 1st specie.
-
Ca:1
- select the first calcium atom (terms like Ca:2-5,Ca:2-,Ca:-5are also legal). -
#2:1
- select the first atom of the second specie (terms like #2:2-5,#2:2-, #2:-5 work as well). -
C:3- Sc
- select all carbon atoms starting from the third, and all scandium atoms. Terms can be joined together (separated by one or more spaces).
如何画自旋向上和向下的局域态密度
选择electronic 菜单中Local DOS +band control选项,输入考察的元素符号,例如先选d电子的spin up,点击add new line得spin up态密度,再选spin down ,同时勾选invert y axis,点击add new line,得d电子的spin down态密度;一次类推
能带结构:需用计算能带时产生的xml文件处理。
p4vasp态密度图自动指定Fermi能级处为0点,但能带结构时,需手动减去Fermi能级
首先是DOS BAND的计算过程,我就不说了这个网上绝对有一大堆。
所有的计算完之后,就该用到P4VASP这个软件了
(1)把你服务器上的计算结果传到本地电脑上面(这里的计算结果指的是你算能带、态密度的最后一步结果,注意要把整个计算文件夹传过来)
(2)运行p4vasp.bat文件,然后点file | load system
,选择你刚才传过来的那个文件夹,然后选中里面的.xml文件
(3)选择菜单栏里面的Electronic | DOS + BANDS
你就可以看到态密度和能带了,里面还有很多其他功能,比如说结构(structure),STM,收敛状况等等,这个需要自己摸索。我想摸索一个新软件的用法对于学计算化学的同学应该不是很难。
(4)最后就是怎么到处结果了,在DOS图左上角有个graph,点这个选择export|
导出你需要的格式。一般我不会直接用它生成的图,我都是导成data格式,然后再origin或其他专业画图软件中画图。
就这么多吧,祝各位好运!