Levinthal's
悖论,涉及蛋白质空间结构的正确而迅速的折叠,其每个肽键与折叠的相关性,数据总计很大,空间结构状态出现的各种可能性很大,但是悖论出现了,细胞内的蛋白质会在极短的时间里,完成了正确的折叠,这就是悖论。原因是什么?
看看下面的介绍,和自己的中文教材内容比较一下,有什么不同?思考以下问题:
一.每个肽键涉及二个可能的空间类型,还是三个空间类型?
二.细胞内蛋白质折叠完成的时间,是在什么量级?
三.解决(解释)悖论的合适答案,目前是什么?
Levinthal's paradox is a thought
experiment, also constituting a self-reference
in the theory of protein
folding. In 1969, Cyrus Levinthal
noted that, because of the very large number of
degrees of freedom in an unfolded polypeptide chain, the
molecule has an astronomical number of possible conformations. An
estimate of 3300 or 10143 was made in one of
his papers[1]
(often incorrectly cited as a 1968 paper[2]).
For example, a polypeptide of 100 residues will have
99 peptide bonds, and
therefore 198 different
phi and psi bond angles. If each of these bond angles can be in
one of three stable conformations, the protein may misfold into a
maximum of 3198 different conformations (including any
possible folding redundancy). Therefore, if a protein were to
attain its correctly folded configuration by sequentially sampling
all the possible conformations, it would require a time longer than
the age of the universe to arrive at its correct native
conformation. This is true even if conformations are sampled at
rapid (nanosecond or
picosecond) rates.
The "paradox" is that most small proteins fold spontaneously on a
millisecond or even microsecond time scale. The solution to this
paradox has been established by computational approaches to
protein
structure prediction.[3]
Levinthal himself was aware that proteins fold
spontaneously and on short timescales. He suggested that the
paradox can be resolved if "protein folding is sped up and guided
by the rapid formation of local interactions which then determine
the further folding of the peptide; this suggests local amino acid
sequences which form stable interactions and serve as nucleation points in
the folding process".[4]
Indeed, the protein folding intermediates
and the partially folded transition
states were experimentally detected, which explains the fast
protein
folding. This is also described as protein folding directed
within funnel-like energy
landscapes[5][6][7]
Some computational approaches to protein structure prediction have
sought to identify and simulate the mechanism of protein
folding.[8]
Levinthal also suggested that the native structure might have a
higher energy, if the lowest energy was not kinetically accessible.
An analogy is a rock tumbling down a hillside that lodges in a
gully rather than reaching the base.[
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