DOSCAR——split_dos
(2010-11-01 10:16:48)
标签:
脚本密度官方执行处理杂谈 |
分类: 学术相关 |
在学习画态密度图,网上找了一个处理DOSCAR的脚本split_dos,官方提供的,应该用得不少。
我在执行时显示
WARNING: not completely test for vasp.4.*
Use at youown risk. Please check results for
consistency
没看懂
附我下的split_dos
#!/bin/ksh
# Script to break the VASP DOSCAR file into segments for
# each atomic site.
# JMS NRL 5/0/02
# Modified to also align the Fermi level from the ground state
# to E=0.0
# JMS NRL 6/19/02
# Executables reside here
BIN=~/vasp/vasp.4.6
if [ $# -ne 0 ]; then
echo "Usage: split_dos"
exit 2
fi
# Script to split the DOSCAR file into the atomic
# projections labeled by atom number
dosfile=DOSCAR
outfile=OUTCAR
infile=INCAR
# Token for splitting the files
token=$(sed -n '6 p' $dosfile | awk '{print $1}')
# Number of points
nl=$(sed -n '6 p' $dosfile | awk '{print $3}')
# Number of atoms
natom=$(sed -n '1 p' $dosfile | awk '{print $1}')
# Get the Fermi level if the OUTCAR file is present,
# else we set it to zero.
if [ -a $outfile ]; then
echo "The" $outfile "exists,
we use it to get the Fermi level,"
echo "the RWIGS tag and the
number of spins."
efermi=$(grep "E-fermi"
$outfile | tail -1 | awk '{print $3}')
echo "Fermi level:"
$efermi
nspin=$(grep "ISPIN" $outfile
| tail -1 | awk '{print $3}')
if [ $nspin -eq 2 ];
then
echo "Spin polarized
calculation"
else
echo "Unpolarized
calculation"
fi
# 2.a
# JMS 2/3/03 Modified to accept specification by LORBIT token.
#
lorbit=$(grep "LORBIT"
$outfile | tail -1 | awk '{print $3}')
if [ $lorbit -ge 10 ];
then
echo "LORBIT > 10"
echo "WARNING: not completely test for
vasp.4.*"
echo "Use at your own risk.
Please check results for consistency."
form=1
else
# 2.a
rwigs=$(grep "RWIGS" $outfile
| tail -1 | awk '{print $3}' | sed 's/\.//g')
if [ $rwigs -eq -100 ];
then
echo "RWIGS token not set"
form=0
else
echo "RWIGS token set"
form=1
fi
# 2.a
fi
# 2.a
else
echo "The" $outfile "does not
exist, we set the Fermi level to 0"
echo "assume an unpolarized
calculation, and RWIGS not set"
form=0
nspin=1
efermi=0.0
fi
# If the outcar file is not present and you wish to set something by hand
# you should do it here. Uncomment the tokens below and set them by hand.
#efermi=2.255
#form=
#nspin=
# Get the atomic coordinates
$BIN/vasp >| tmp.dat
tail -$natom tmp.dat | awk '{printf "%s .8f .8f .8f \n", "#", $2, $3, $4}' >| tmp.dat2
# Total is first DOS
if [ $form -eq 0 ]; then
i=0
else
i=0
fi
start=7
end=$((start+nl-1))
#echo $start $end
#exit 0
rm -f DOS0
if [ $form -eq 1 ]; then
while [ $i -le $natom ];
do
#echo $i $start $end
if [ $i -gt 0 ]; then
sed -n ''$i' p' tmp.dat2 >|
DOS$i
fi
if [ $i -gt 0 ]; then
# Atomic projected DOS
if [ $nspin -eq 2 ]; then
sed -n ''$start','$end' p' $dosfile | awk
'{printf ".8f .8f .8f .8f .8f .8f .8f \n", $1+(-1)*'$efermi', $2,
-1*$3, $4, -1*$5, $6, -1*$7}' >>
DOS$i
else
sed -n ''$start','$end' p' $dosfile | awk
'{printf ".8f .8f .8f .8f \n", $1+(-1)*'$efermi', $2, $3, $4 }'
>> DOS$i
fi
else
# Total DOS
if [ $nspin -eq 2 ]; then
sed -n ''$start','$end' p' $dosfile | awk
'{printf ".8f .8f .8f .8f .8f \n", $1+(-1)*'$efermi', $2, -1*$3,
$4, -1*$5 }' >> DOS$i
else
sed -n ''$start','$end' p' $dosfile | awk
'{printf ".8f .8f .8f \n", $1+(-1)*'$efermi', $2, $3 }'
>> DOS$i
fi
fi
start=$((end+2))
end=$((start+nl-1))
i=$((i+1))
done
else
while [ $i -le 0 ]; do
#echo $i $start $end
if [ $i -gt 0 ]; then
sed -n ''$i' p' tmp.dat2 >|
DOS$i
fi
if [ $i -gt 0 ]; then
# Atomic projected DOS
if [ $nspin -eq 2 ]; then
sed -n ''$start','$end' p' $dosfile | awk
'{printf ".8f .8f .8f .8f .8f .8f .8f \n", $1+(-1)*'$efermi', $2,
-1*$3, $4, -1*$5, $6, -1*$7}' >>
DOS$i
else
sed -n ''$start','$end' p' $dosfile | awk
'{printf ".8f .8f .8f .8f \n", $1+(-1)*'$efermi', $2, $3, $4 }'
>> DOS$i
fi
else
# Total DOS
if [ $nspin -eq 2 ]; then
我在执行时显示
WARNING: not completely test for vasp.4.*
Use at you
没看懂
附我下的split_dos
#!/bin/ksh
# Script to break the VASP DOSCAR file into segments for
# each atomic site.
# JMS NRL 5/0/02
# Modified to also align the Fermi level from the ground state
# to E=0.0
# JMS NRL 6/19/02
# Executables reside here
BIN=~/vasp/vasp.4.6
if [ $# -ne 0 ]; then
fi
# Script to split the DOSCAR file into the atomic
# projections labeled by atom number
dosfile=DOSCAR
outfile=OUTCAR
infile=INCAR
# Token for splitting the files
token=$(sed -n '6 p' $dosfile | awk '{print $1}')
# Number of points
nl=$(sed -n '6 p' $dosfile | awk '{print $3}')
# Number of atoms
natom=$(sed -n '1 p' $dosfile | awk '{print $1}')
# Get the Fermi level if the OUTCAR file is present,
# else we set it to zero.
if [ -a $outfile ]; then
# 2.a
# JMS 2/3/03 Modified to accept specification by LORBIT token.
#
# 2.a
# 2.a
# 2.a
else
fi
# If the outcar file is not present and you wish to set something by hand
# you should do it here. Uncomment the tokens below and set them by hand.
#efermi=2.255
#form=
#nspin=
# Get the atomic coordinates
$BIN/vasp >| tmp.dat
tail -$natom tmp.dat | awk '{printf "%s .8f .8f .8f \n", "#", $2, $3, $4}' >| tmp.dat2
# Total is first DOS
if [ $form -eq 0 ]; then
i=0
else
i=0
fi
start=7
end=$((start+nl-1))
#echo $start $end
#exit 0
rm -f DOS0
if [ $form -eq 1 ]; then
# Atomic projected DOS
# Total DOS
else
# Atomic projected DOS
# Total DOS