[转载]Wyckoff Positions
(2014-12-02 11:00:01)
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转载 |
http://www.cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list
下面是从其他网站转的,读过后,对wyckoff
position 可以有大致的了解了。
Space Groups & The International Tables for Crystallography
From examination of a space group in “The International Tables for Crystallography” Vol. A, you should be able to ascertain the following information:
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Understanding the Herman-Mauguin Space Group Symbol
Space groups are typically identified by their short
Herman-Mauguin symbol (i.e. Pnma, I4/mmm, etc.).
The HM space group symbol can be derived from the symmetry elements present using the following logic.
The first letter identifies the centering of the lattice, I will hereafter refer to this as the lattice descriptor :
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The next three symbols denote symmetry elements present in certain directions, those directions are as follows:
Crystal System |
Symmetry Direction |
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Primary |
Secondary |
Tertiary |
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Triclinic |
None |
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Monoclinic |
[010] |
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Orthorhombic |
[100] |
[010] |
[001] |
Tetragonal |
[001] |
[100]/[010] |
[110] |
Hexagonal/ Trigonal |
[001] |
[100]/[010] |
[120]/[1`1 0] |
Cubic |
[100]/[010]/ [001] |
[111] |
[110] |
[100] – Axis parallel or plane perpendicular to the x-axis.
[010] – Axis parallel or plane perpendicular to the y-axis.
[001] – Axis parallel or plane perpendicular to the z-axis.
[110] – Axis parallel or plane perpendicular to the line running at 45° to the x and y axes.
[1`1 0] – Axis parallel or plane perpendicular to the long face diagonal of the ab face of a hexagonal cell.
[111] – Axis parallel or plane perpendicular to the body diagonal.
For a better understanding see specific examples from class
notes.
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The point group can be determined from the short H-M symbol by
converting glide planes to mirror planes and screw axes to rotation
axes. For example:
Space Group = Pnma ® Point Group = mmm
Space Group = I`4c2 ® Point Group =`4m2
Space Group = P42/n ® Point Group = 4/m
Wyckoff Sites
One of the most useful pieces of information contained in the
International Tables are the Wyckoff positions. The Wyckoff
positions tell us where the atoms in a crystal can be
found. To understand how they work consider the
monoclinic space group Pm. This space group has
only two symmetry elements, both mirror planes perpendicular to the
b-axis. One at y = 0 and one at y = ½ (halfway up
the unit cell in the b direction). Now let’s place an atom in the
unit cell at an arbitrary position, x,y,z. If we
now carry out the symmetry operation associated with this space
group a second atom will be generated by the mirror plane at
x,-y,z. However, if we were to place the atom on
one of the mirror planes (its y coordinate would have to be either
0 or ½) then the reflection operation would not create a second
atom.
All of the information in the proceeding paragraph is contained
in Wyckoff positions section of the International
Tables. Pm has three Wyckoff sites as shown in
the table below:
Multiplicity |
Wyckoff Letter |
Site Symmetry |
Coordinates |
2 |
c |
1 |
(1) x,y,z |
1 |
b |
m |
x,½,z |
1 |
a |
m |
x,0,z |
The multiplicity tells us how many atoms are generated by
symmetry if we place a single atom at that
position.
All of the remaining Wyckoff positions are called special
positions.
Generating a Crystal Structure from its Crystallographic Description
Using the space group information contained in the
International Tables we can do many things. One
powerful use is to generate an entire crystal structure from a
brief description.
Consider the following description of the crystal structure of Sr2AlTaO6.
Space Group = Fm`3m
a = 7.80 Å
Atomic Positions
Atom
X
Y
Z
Sr
0.25
0.25
0.25
Al
0.0
0.0 0.0
Ta
0.5
0.5 0.5
O
0.24
0.0 0.0
From the space group tables we see that the atoms are located on the following Wyckoff sites
Sr
Al ® 4a
Ta ® 4b
O
The number associated with the Wyckoff sites tells us how many
atoms of that type there are in the unit cell.
So there are 40 atoms in the unit cell, with stoichiometry
Sr8Al4Ta4O24 which
reduces to the empirical formula
Sr2AlTaO6.
Using the face centering generators (0,0,0), (½,½,0), (½,0,½), (0,½,½) together with the coordinates of each Wyckoff site we can generate the fractional coordinates of all atoms in the unit cell:
Sr
1:(0.25,0.25,0.25), 2:(0.75,0.75,0.25), 3:(0.75,0.25,0.75), 4:(0.25,0.75,0.75)
5:(0.25,0.25,0.75), 6:(0.75,0.75,0.75), 7:(0.75,0.25,0.25), 8:(0.25,0.75,0.25)
Al
1:(0.0,0.0,0.0), 2:(0.5,0.5,0.0), 3:(0.5,0.0,0.5), 4:(0.0,0.5,0.5)
Ta
1:(0.5,0.5,0.5), 2:(0.0,0.0,0.5), 3:(0.0,0.5,0.0), 4:(0.5,0.0,0.0)
O
1:(0.24,0.0,0.0),
5:(0.76,0.0,0.0),
9:(0.0,0.24,0.0),
13:(0.0,0.76,0.0), 14:(0.5,0.26,0.0), 15:(0.5,0.76,0.5), 16:(0.0,0.26,0.5)
17:(0.0,0.0,0.24), 18:(0.5,0.5,0.24), 19:(0.5,0.0,0.74), 20:(0.0,0.5,0.74)
21:(0.0,0.0,0.76), 22:(0.5,0.5,0.76), 23:(0.5,0.0,0.26), 24:(0.0,0.5,0.26)
From these fractional coordinates you can sketch out the
structure of Sr2AlTaO6.
With some luck I will provide a link to a picture of the structure
here, at some point in the future.
We can also work out bond distances from this
information.
d = 7.80´[(0.24-0.0)2 + (0.0-0.0)2 + (0.0-0.0)2]1/2 = 1.87Å
while the first Ta ion is also surrounded by 6 oxygens (4,8,11,15,18,22) at a distance of
d = 7.80´[(0.24-0.5)2 + (0.5-0.5)2 + (0.5-0.5)2]1/2 = 2.03Å
and Sr is surrounded by 12 oxygens (1,4,6,7,9,11,14,16,17,18,23,24) at a distance of
d = 7.80´[(0.24-0.25)2 + (0.0-0.25)2 + (0.0-0.25)2]1/2 = 2.76Å
Determining a Crystal Structure from Symmetry & Composition
Another use is that given the stoichiometry, space group and unit cell size (which can typically be determined from diffraction techniques) and the density of a compound we can often deduce the crystal structure of relatively simple compounds.
As an example consider the following information:
Stoichiometry = SrTiO3
Space Group = Pm3m
a = 3.90 Å
Density = 5.1 g/cm3
To derive the crystal structure from this information the first step is to calculate the number of formula units per unit cell :
Formula Weight SrTiO3 = 87.62 + 47.87 + 3´(16.00) = 183.49 g/mol
Unit Cell Volume = (3.90´10-8 cm)3 = 5.93´10-23 cm3
(5.1 g/cm3)´(5.93´10-23 cm3)´(mol/183.49 g)´(6.022´1023/mol) = 0.99
Thus there is one formula unit per unit cell (Z=1), and the number of atoms per unit cell is : 1 Sr, 1 Ti and 3 O.
Next we compare the number of atoms in the unit cell with the multiplicities of the Wyckoff sites.
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If we arbitrarily put Ti at the origin (1a), then by default Sr
must go to 1b.
D (O @ 3c) = 3.90´[(0-0)2 + (0-0.5)2 + (0-0.5)2]1/2 = 2.76Å
D (O @ 3d) = 3.90´[(0-0.5)2 + (0-0)2 + (0-0)2]1/2 = 1.95Å
Of these two the latter (3d) is obviously more appropriate for a Ti-O bond (consult tables of ionic radii to convince yourself of this statement).
Thus we obtain the structure of SrTiO3 to be
Space Group = Pm3m
a = 3.90 Å
Atomic Positions
Atom
Site
X
Y
Z
Sr
1b 0.5
0.5
0.5
Ti
1a
0.0
0.0 0.0
O
3d
0.5
0.0 0.0